I think that a very important point is the decision as to whether the subsistence payment constitutes 'remuneration' or 'expense reimbursement'.
The Institute seems to be treating it as remuneration which to my mind is an incorrect treatment- I'd agree that the honorarium should be treated as remuneration with PAYE/ levies applied [although you could argue the toss as to whether you are an employee (with tax and levies) or a consultant (you'd have to sort out your own tax but wouldn't be liable to the PS levies) when acting as moderator] but I would feel that it's an illogical treatment to apply to the subsistence. I would definitely take the point up with the Finance Office in the Institute in which you act as moderator, as I suspect that it's a clerical error which needs rectification. Under the current treatment, as you point out, you're effectively receiving c.50% of the subsistence after deductions.
Reimbursing someone for the cost of getting to/from their normal place of work isn't subsistence, it's additional pay.
That's definitely the case where you are referring to reimbursement for the cost of going to work from home.
However, if the OP is travelling from one normal place of work to a second normal place of work [analogous to a travelling sales rep], I think it introduces a different factor. My reading of this second scenario is that the travel expenses are payable tax free, but I'd agree that the best route is to resolve it by checking directly with the local Revenue office.
I'd also suggest seeking clarification as to whether the OP is in fact an employee or a consultant when performing this activity.
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