Form 11 & CGT Payment

I fill out a form 11 every year for rental purposes, health expenses, etc, however this year I have CGT to pay on shares I have sold. When I do the CGT self assessment and the form 11, I had a positive balance so the question is should I have paid the CGT and then wait for refund on rest or will revenue balance one off the other?

When to file -

You should file by 31 October in the year after the date of disposal. You must do this even if no tax is due because of reliefs or losses

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When to pay

For disposals made between 1 January and 30 November (the initial period) you must pay CGT by 15 December of the same year.
For disposals made between 1 December and 31 December (the later period) you must pay CGT by 31 January of the next year

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From Revenue web site

@jpd , thanks! so take it, they will not take it from the refund they owe me from my form 11 tax returns and have to make separate payment

I don't know , sorry - you can always wait and see - what have you entered on the Form 11/CGT - they usually calculate a total to be paid or refunded